miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cynodon dactylon, Eragrostis curvula, Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042578
species: Sorghum bicolor
miRNA family: MIR395
source: miRBase, original name: sbi-MIR395i (MI0010893)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GTGAAGTGTTTGGGGGAACTC

miRNA*
GTTCCCTGCAAACACTTCACAA

mismatches: 2
bulges: 1

View larger
pre-miRNA
GTTCCCTGCAAACACTTCACAAGCTAGACCATATATAGTATGCCCTTGCACAATGTGGTATCCAGTTACCTAGCTAGTGAAGTGTTTGGGGGAACTC

dot-bracket secondary structure
(((((((.((((((((((((.(((((((((((((...(((......)))...)))))))..........)))))).)))))))))))))))))))..


SIMILARITIES
miRBase zma-MIR395a: 0.00000002

PMRD sbi-miR395i: 3e-50

microPC miR395: 0.00007
UniProt no hits

RFAM mir-395: 6e-49

Identical with: sbi-miR395i from PMRD (MNEST054481)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"




Liczniki na strone;